STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ87035.1Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (479 aa)    
Predicted Functional Partners:
SEJ56258.1
4-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.809
SEJ94555.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
 
0.783
SEJ87046.1
Predicted oxidoreductase.
   
  0.782
SEJ05811.1
Citrate synthase; Belongs to the citrate synthase family.
   
  0.780
SEJ27087.1
Citrate synthase.
   
  0.780
SEJ98936.1
Citrate synthase; Belongs to the citrate synthase family.
   
  0.780
SEJ98910.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
  0.770
SEJ52701.1
4-hydroxybutyrate dehydrogenase.
 
  0.767
gltB
Glutamate synthase (NADH) large subunit.
  
 
 0.764
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.749
Your Current Organism:
Paraburkholderia diazotrophica
NCBI taxonomy Id: 667676
Other names: BCRC 80259, Burkholderia diazotrophica, Burkholderia diazotrophica Sheu et al. 2013, Burkholderia sp. DPU-3, Burkholderia sp. JPY359, Burkholderia sp. JPY389, Burkholderia sp. JPY461, Burkholderia sp. NKMU-JPY359, Burkholderia sp. NKMU-JPY389, Burkholderia sp. NKMU-JPY461, Burkholderia sp. STM4206, KCTC 23308, LMG 26031, LMG:26031, NKMU JPY461, NKMU-JPY461, P. diazotrophica, Paraburkholderia diazotrophica (Sheu et al. 2013) Sawana et al. 2015, strain JPY461
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