STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ88643.1Squalene-hopene/tetraprenyl-beta-curcumene cyclase. (140 aa)    
Predicted Functional Partners:
SEI97455.1
Methyltransferase domain-containing protein.
    
 0.902
SEI64199.1
Dihydroflavonol-4-reductase.
 
 
 0.864
SEI99135.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
  
 0.854
SEJ24708.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
 0.829
SEJ75538.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
 0.829
SEK04848.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
 0.829
SEK12926.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
 0.829
SEI63349.1
Farnesyl-diphosphate farnesyltransferase.
 
 
 0.828
SEI64058.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
 
   
 0.810
SEI63456.1
Hopanoid-associated phosphorylase.
 
   
 0.803
Your Current Organism:
Paraburkholderia diazotrophica
NCBI taxonomy Id: 667676
Other names: BCRC 80259, Burkholderia diazotrophica, Burkholderia diazotrophica Sheu et al. 2013, Burkholderia sp. DPU-3, Burkholderia sp. JPY359, Burkholderia sp. JPY389, Burkholderia sp. JPY461, Burkholderia sp. NKMU-JPY359, Burkholderia sp. NKMU-JPY389, Burkholderia sp. NKMU-JPY461, Burkholderia sp. STM4206, KCTC 23308, LMG 26031, LMG:26031, NKMU JPY461, NKMU-JPY461, P. diazotrophica, Paraburkholderia diazotrophica (Sheu et al. 2013) Sawana et al. 2015, strain JPY461
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