SARC_18130 protein (Sphaeroforma arctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SARC_18130

USP domain-containing protein. (46 aa)

Predicted Functional Partners:

SARC_06142

0.741

SARC_13864

0.726

SARC_03571

0.724

SARC_01239

0.718

SARC_14777

0.711

SARC_13426

0.709

SARC_04740

0.706

SARC_06551

0.704

SARC_00224

0.702

SARC_01519

0.697

Your Current Organism:

Sphaeroforma arctica

NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SARC_00224	SARC_01239	A0A0L0GH46	A0A0L0GC98	60S ribosomal protein L26.	Uncharacterized protein.	0.998
SARC_00224	SARC_03571	A0A0L0GH46	A0A0L0G5A3	60S ribosomal protein L26.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.997
SARC_00224	SARC_04740	A0A0L0GH46	A0A0L0G1H5	60S ribosomal protein L26.	Ubiquitin-60S ribosomal protein L40, variant.	0.998
SARC_00224	SARC_06142	A0A0L0GH46	A0A0L0FXG6	60S ribosomal protein L26.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998
SARC_00224	SARC_06551	A0A0L0GH46	A0A0L0FWD7	60S ribosomal protein L26.	Uncharacterized protein.	0.991
SARC_00224	SARC_13426	A0A0L0GH46	A0A0L0FBZ5	60S ribosomal protein L26.	Uncharacterized protein.	0.998
SARC_00224	SARC_13864	A0A0L0GH46	A0A0L0FBY6	60S ribosomal protein L26.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.996
SARC_00224	SARC_14777	A0A0L0GH46	A0A0L0F980	60S ribosomal protein L26.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.998
SARC_00224	SARC_18130	A0A0L0GH46	A0A0L0EZS7	60S ribosomal protein L26.	USP domain-containing protein.	0.702
SARC_01239	SARC_00224	A0A0L0GC98	A0A0L0GH46	Uncharacterized protein.	60S ribosomal protein L26.	0.998
SARC_01239	SARC_03571	A0A0L0GC98	A0A0L0G5A3	Uncharacterized protein.	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.997
SARC_01239	SARC_06142	A0A0L0GC98	A0A0L0FXG6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998
SARC_01239	SARC_06551	A0A0L0GC98	A0A0L0FWD7	Uncharacterized protein.	Uncharacterized protein.	0.994
SARC_01239	SARC_13426	A0A0L0GC98	A0A0L0FBZ5	Uncharacterized protein.	Uncharacterized protein.	0.998
SARC_01239	SARC_13864	A0A0L0GC98	A0A0L0FBY6	Uncharacterized protein.	50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.998
SARC_01239	SARC_14777	A0A0L0GC98	A0A0L0F980	Uncharacterized protein.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.992
SARC_01239	SARC_18130	A0A0L0GC98	A0A0L0EZS7	Uncharacterized protein.	USP domain-containing protein.	0.718
SARC_01519	SARC_04740	A0A0L0GBE7	A0A0L0G1H5	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ubiquitin-60S ribosomal protein L40, variant.	0.981
SARC_01519	SARC_18130	A0A0L0GBE7	A0A0L0EZS7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	USP domain-containing protein.	0.697
SARC_03571	SARC_00224	A0A0L0G5A3	A0A0L0GH46	50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L26.	0.997