STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_17288CPSF_A domain-containing protein. (108 aa)    
Predicted Functional Partners:
SARC_11387
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.952
SARC_08943
WD_REPEATS_REGION domain-containing protein.
    
 0.948
SARC_09134
Uncharacterized protein.
    
 0.947
SARC_05312
Uncharacterized protein.
    
 0.946
SARC_06937
WD_REPEATS_REGION domain-containing protein.
    
 0.942
SARC_05774
CID domain-containing protein.
    
 0.939
SARC_17205
Uncharacterized protein.
   
 0.874
SARC_16382
Beta-Casp domain-containing protein.
   
 0.874
SARC_14436
Uncharacterized protein.
    
 0.866
SARC_02288
Uncharacterized protein.
    
 0.866
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.