STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_16662cobW domain-containing protein. (98 aa)    
Predicted Functional Partners:
SARC_03571
50S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.833
SARC_08886
Uncharacterized protein.
   
 
 0.807
SARC_06551
Uncharacterized protein.
   
 
 0.799
SARC_13844
30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
   
   0.790
SARC_07302
50S ribosomal protein L15.
   
   0.788
SARC_10535
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.787
SARC_06024
50S ribosomal protein L13.
   
 
 0.778
SARC_03226
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.777
SARC_10987
Ribosomal_L2_C domain-containing protein.
   
   0.769
SARC_02348
50S ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family.
   
   0.766
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.