STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_14893Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (73 aa)    
Predicted Functional Partners:
SARC_07373
Uncharacterized protein.
   
 0.965
SARC_03240
Uncharacterized protein.
   
 0.965
SARC_07501
Protein SEC13; Belongs to the WD repeat SEC13 family.
   
 0.954
SARC_16158
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.939
SARC_15787
Uncharacterized protein.
    
 0.885
SARC_02240
Uncharacterized protein.
    
 0.885
SARC_02055
Uncharacterized protein.
   
 0.812
SARC_02150
Sec16_C domain-containing protein.
   
 0.812
SARC_02054
Uncharacterized protein.
   
 0.812
SARC_07720
GRASP55_65 domain-containing protein.
   
 0.805
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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