SARC_14567 protein (Sphaeroforma arctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SARC_14567

Protein kinase domain-containing protein. (84 aa)

Predicted Functional Partners:

SARC_11483

0.997

SARC_11358

0.994

SARC_12280

0.992

SARC_15528

0.985

SARC_14025

0.985

SARC_09234

0.983

SARC_12642

0.979

SARC_16715

0.978

SARC_00490

0.978

SARC_02584

0.977

Your Current Organism:

Sphaeroforma arctica

NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SARC_00490	SARC_02584	A0A0L0GEU2	A0A0L0G8K1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	PHD-type domain-containing protein.	0.780
SARC_00490	SARC_09234	A0A0L0GEU2	A0A0L0FNG1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.981
SARC_00490	SARC_11358	A0A0L0GEU2	A0A0L0FI50	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TFIIE domain-containing protein.	0.978
SARC_00490	SARC_11483	A0A0L0GEU2	A0A0L0FHR0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Cyclin_C_2 domain-containing protein.	0.969
SARC_00490	SARC_12280	A0A0L0GEU2	A0A0L0FEJ9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Ssl1 domain-containing protein.	0.967
SARC_00490	SARC_12642	A0A0L0GEU2	A0A0L0FFJ3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.966
SARC_00490	SARC_14025	A0A0L0GEU2	A0A0L0FBE5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.954
SARC_00490	SARC_14567	A0A0L0GEU2	A0A0L0F849	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Protein kinase domain-containing protein.	0.978
SARC_00490	SARC_15528	A0A0L0GEU2	A0A0L0F5M9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.954
SARC_02584	SARC_00490	A0A0L0G8K1	A0A0L0GEU2	PHD-type domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.780
SARC_02584	SARC_09234	A0A0L0G8K1	A0A0L0FNG1	PHD-type domain-containing protein.	RPOLD domain-containing protein.	0.991
SARC_02584	SARC_11358	A0A0L0G8K1	A0A0L0FI50	PHD-type domain-containing protein.	TFIIE domain-containing protein.	0.912
SARC_02584	SARC_11483	A0A0L0G8K1	A0A0L0FHR0	PHD-type domain-containing protein.	Cyclin_C_2 domain-containing protein.	0.914
SARC_02584	SARC_12280	A0A0L0G8K1	A0A0L0FEJ9	PHD-type domain-containing protein.	Ssl1 domain-containing protein.	0.993
SARC_02584	SARC_12642	A0A0L0G8K1	A0A0L0FFJ3	PHD-type domain-containing protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.989
SARC_02584	SARC_14025	A0A0L0G8K1	A0A0L0FBE5	PHD-type domain-containing protein.	Uncharacterized protein.	0.981
SARC_02584	SARC_14567	A0A0L0G8K1	A0A0L0F849	PHD-type domain-containing protein.	Protein kinase domain-containing protein.	0.977
SARC_02584	SARC_15528	A0A0L0G8K1	A0A0L0F5M9	PHD-type domain-containing protein.	Uncharacterized protein.	0.981
SARC_02584	SARC_16715	A0A0L0G8K1	A0A0L0F241	PHD-type domain-containing protein.	RNA_pol_Rpb1_1 domain-containing protein.	0.780
SARC_09234	SARC_00490	A0A0L0FNG1	A0A0L0GEU2	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.981