STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_12569Uncharacterized protein. (99 aa)    
Predicted Functional Partners:
SARC_00771
Uncharacterized protein.
   
 0.975
SARC_05209
Matrin-type domain-containing protein.
    
 0.963
SARC_01497
Splicing factor 3B subunit 3.
   
 0.963
SARC_03888
Uncharacterized protein.
    
 0.960
SARC_06338
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.881
SARC_08057
Uncharacterized protein.
    
 0.862
SARC_00836
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.784
SARC_11726
Uncharacterized protein.
   
 0.776
SARC_08424
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
  0.772
SARC_17883
DUF382 domain-containing protein.
   
 0.771
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.