STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_12473Uncharacterized protein. (201 aa)    
Predicted Functional Partners:
SARC_01671
RanBP2-type domain-containing protein.
   
 0.998
SARC_08861
RRM Nup35-type domain-containing protein.
    
 0.926
SARC_10955
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
   
 0.924
SARC_02012
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.889
SARC_00153
Uncharacterized protein.
    
 0.873
SARC_12413
Nucleoporin_N domain-containing protein.
   
 0.871
SARC_06686
Nucleoporin_N domain-containing protein.
   
 0.871
SARC_07501
Protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.863
SARC_05475
Uncharacterized protein.
   
 0.860
SARC_05474
Uncharacterized protein.
   
 0.854
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.