SARC_12313 protein (Sphaeroforma arctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SARC_12313

CAMK/CDPK protein kinase. (598 aa)

Predicted Functional Partners:

SARC_01647

0.833

SARC_12204

0.765

SARC_08748

0.765

SARC_08017

0.765

SARC_01082

0.765

SARC_11152

0.748

SARC_07884

0.743

SARC_07034

0.711

SARC_09304

0.703

SARC_14376

0.701

Your Current Organism:

Sphaeroforma arctica

NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SARC_01082	SARC_01647	A0A0L0GD01	A0A0L0GB33	Uncharacterized protein.	Tubulin domain-containing protein.	0.914
SARC_01082	SARC_07034	A0A0L0GD01	A0A0L0FVP4	Uncharacterized protein.	BZIP domain-containing protein.	0.559
SARC_01082	SARC_07884	A0A0L0GD01	A0A0L0FSR2	Uncharacterized protein.	Mitogen-activated protein kinase.	0.539
SARC_01082	SARC_11152	A0A0L0GD01	A0A0L0FIN4	Uncharacterized protein.	CMGC/MAPK protein kinase.	0.539
SARC_01082	SARC_12313	A0A0L0GD01	A0A0L0FEG6	Uncharacterized protein.	CAMK/CDPK protein kinase.	0.765
SARC_01082	SARC_14376	A0A0L0GD01	A0A0L0F8M6	Uncharacterized protein.	Uncharacterized protein.	0.539
SARC_01647	SARC_01082	A0A0L0GB33	A0A0L0GD01	Tubulin domain-containing protein.	Uncharacterized protein.	0.914
SARC_01647	SARC_07884	A0A0L0GB33	A0A0L0FSR2	Tubulin domain-containing protein.	Mitogen-activated protein kinase.	0.686
SARC_01647	SARC_08017	A0A0L0GB33	A0A0L0FSB2	Tubulin domain-containing protein.	Calmodulin; Belongs to the calmodulin family.	0.914
SARC_01647	SARC_08748	A0A0L0GB33	A0A0L0FQL0	Tubulin domain-containing protein.	Myosin light chain 1/3/4/6, alkali.	0.914
SARC_01647	SARC_11152	A0A0L0GB33	A0A0L0FIN4	Tubulin domain-containing protein.	CMGC/MAPK protein kinase.	0.686
SARC_01647	SARC_12204	A0A0L0GB33	A0A0L0FFL6	Tubulin domain-containing protein.	Uncharacterized protein.	0.914
SARC_01647	SARC_12313	A0A0L0GB33	A0A0L0FEG6	Tubulin domain-containing protein.	CAMK/CDPK protein kinase.	0.833
SARC_01647	SARC_14376	A0A0L0GB33	A0A0L0F8M6	Tubulin domain-containing protein.	Uncharacterized protein.	0.686
SARC_07034	SARC_01082	A0A0L0FVP4	A0A0L0GD01	BZIP domain-containing protein.	Uncharacterized protein.	0.559
SARC_07034	SARC_07884	A0A0L0FVP4	A0A0L0FSR2	BZIP domain-containing protein.	Mitogen-activated protein kinase.	0.713
SARC_07034	SARC_08017	A0A0L0FVP4	A0A0L0FSB2	BZIP domain-containing protein.	Calmodulin; Belongs to the calmodulin family.	0.559
SARC_07034	SARC_08748	A0A0L0FVP4	A0A0L0FQL0	BZIP domain-containing protein.	Myosin light chain 1/3/4/6, alkali.	0.559
SARC_07034	SARC_11152	A0A0L0FVP4	A0A0L0FIN4	BZIP domain-containing protein.	CMGC/MAPK protein kinase.	0.713
SARC_07034	SARC_12204	A0A0L0FVP4	A0A0L0FFL6	BZIP domain-containing protein.	Uncharacterized protein.	0.559