SARC_10997 protein (Sphaeroforma arctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SARC_10997

Uncharacterized protein. (140 aa)

Predicted Functional Partners:

SARC_09504

0.967

SARC_01158

0.966

SARC_11666

0.965

SARC_10800

0.909

SARC_01862

0.908

SARC_16209

0.907

SARC_04049

0.888

SARC_02521

0.885

SARC_03883

0.876

SARC_02789

0.876

Your Current Organism:

Sphaeroforma arctica

NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SARC_01158	SARC_09504	A0A0L0GCF4	A0A0L0FPY8	MAGE domain-containing protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.997
SARC_01158	SARC_10800	A0A0L0GCF4	A0A0L0FL27	MAGE domain-containing protein.	Rad21_Rec8_N domain-containing protein.	0.685
SARC_01158	SARC_10997	A0A0L0GCF4	A0A0L0FJ61	MAGE domain-containing protein.	Uncharacterized protein.	0.966
SARC_01158	SARC_11666	A0A0L0GCF4	A0A0L0FGA7	MAGE domain-containing protein.	SP-RING-type domain-containing protein.	0.995
SARC_01862	SARC_10800	A0A0L0GAQ5	A0A0L0FL27	SCD domain-containing protein.	Rad21_Rec8_N domain-containing protein.	0.998
SARC_01862	SARC_10997	A0A0L0GAQ5	A0A0L0FJ61	SCD domain-containing protein.	Uncharacterized protein.	0.908
SARC_01862	SARC_11666	A0A0L0GAQ5	A0A0L0FGA7	SCD domain-containing protein.	SP-RING-type domain-containing protein.	0.699
SARC_02521	SARC_04049	A0A0L0GAL7	A0A0L0G4B5	Cnd3 domain-containing protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.998
SARC_02521	SARC_10800	A0A0L0GAL7	A0A0L0FL27	Cnd3 domain-containing protein.	Rad21_Rec8_N domain-containing protein.	0.464
SARC_02521	SARC_10997	A0A0L0GAL7	A0A0L0FJ61	Cnd3 domain-containing protein.	Uncharacterized protein.	0.885
SARC_02789	SARC_09504	A0A0L0G7M4	A0A0L0FPY8	Uncharacterized protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.969
SARC_02789	SARC_10800	A0A0L0G7M4	A0A0L0FL27	Uncharacterized protein.	Rad21_Rec8_N domain-containing protein.	0.638
SARC_02789	SARC_10997	A0A0L0G7M4	A0A0L0FJ61	Uncharacterized protein.	Uncharacterized protein.	0.876
SARC_02789	SARC_11666	A0A0L0G7M4	A0A0L0FGA7	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.967
SARC_03883	SARC_09504	A0A0L0G4B1	A0A0L0FPY8	Uncharacterized protein.	Non-structural maintenance of chromosomes element 4; Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.	0.969
SARC_03883	SARC_10800	A0A0L0G4B1	A0A0L0FL27	Uncharacterized protein.	Rad21_Rec8_N domain-containing protein.	0.638
SARC_03883	SARC_10997	A0A0L0G4B1	A0A0L0FJ61	Uncharacterized protein.	Uncharacterized protein.	0.876
SARC_03883	SARC_11666	A0A0L0G4B1	A0A0L0FGA7	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.967
SARC_04049	SARC_02521	A0A0L0G4B5	A0A0L0GAL7	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Cnd3 domain-containing protein.	0.998
SARC_04049	SARC_10800	A0A0L0G4B5	A0A0L0FL27	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Rad21_Rec8_N domain-containing protein.	0.445