SARC_10605 protein (Sphaeroforma arctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SARC_10605

MUTSd domain-containing protein. (112 aa)

Predicted Functional Partners:

SARC_01519

0.884

SARC_01526

0.853

SARC_16211

0.834

SARC_13889

0.834

SARC_08062

0.834

SARC_12845

0.831

SARC_07410

0.831

SARC_05411

0.831

SARC_05050

0.768

SARC_05856

0.724

Your Current Organism:

Sphaeroforma arctica

NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SARC_01519	SARC_01526	A0A0L0GBE7	A0A0L0GDJ1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.821
SARC_01519	SARC_05050	A0A0L0GBE7	A0A0L0G3B4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.823
SARC_01519	SARC_05411	A0A0L0GBE7	A0A0L0G0D7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	MutL_C domain-containing protein.	0.862
SARC_01519	SARC_05856	A0A0L0GBE7	A0A0L0FZ35	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Replication protein A subunit.	0.983
SARC_01519	SARC_07410	A0A0L0GBE7	A0A0L0FW96	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	DNA_mis_repair domain-containing protein.	0.862
SARC_01519	SARC_08062	A0A0L0GBE7	A0A0L0FUD6	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Mlh1_C domain-containing protein.	0.875
SARC_01519	SARC_10605	A0A0L0GBE7	A0A0L0FJF8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	MUTSd domain-containing protein.	0.884
SARC_01519	SARC_12845	A0A0L0GBE7	A0A0L0FCY0	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.862
SARC_01519	SARC_13889	A0A0L0GBE7	A0A0L0FAK3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.875
SARC_01519	SARC_16211	A0A0L0GBE7	A0A0L0F3I3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Uncharacterized protein.	0.875
SARC_01526	SARC_01519	A0A0L0GDJ1	A0A0L0GBE7	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.821
SARC_01526	SARC_05050	A0A0L0GDJ1	A0A0L0G3B4	Uncharacterized protein.	Uncharacterized protein.	0.601
SARC_01526	SARC_05411	A0A0L0GDJ1	A0A0L0G0D7	Uncharacterized protein.	MutL_C domain-containing protein.	0.621
SARC_01526	SARC_05856	A0A0L0GDJ1	A0A0L0FZ35	Uncharacterized protein.	Replication protein A subunit.	0.514
SARC_01526	SARC_07410	A0A0L0GDJ1	A0A0L0FW96	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.621
SARC_01526	SARC_08062	A0A0L0GDJ1	A0A0L0FUD6	Uncharacterized protein.	Mlh1_C domain-containing protein.	0.967
SARC_01526	SARC_10605	A0A0L0GDJ1	A0A0L0FJF8	Uncharacterized protein.	MUTSd domain-containing protein.	0.853
SARC_01526	SARC_12845	A0A0L0GDJ1	A0A0L0FCY0	Uncharacterized protein.	Uncharacterized protein.	0.621
SARC_01526	SARC_13889	A0A0L0GDJ1	A0A0L0FAK3	Uncharacterized protein.	Uncharacterized protein.	0.978
SARC_01526	SARC_16211	A0A0L0GDJ1	A0A0L0F3I3	Uncharacterized protein.	Uncharacterized protein.	0.978