STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_09822Thioredoxin-like_fold domain-containing protein. (166 aa)    
Predicted Functional Partners:
SARC_03228
Uncharacterized protein.
   
 0.947
SARC_11887
Uncharacterized protein.
    
 0.944
SARC_08751
POP4 domain-containing protein.
    
 0.944
SARC_05582
POP1 domain-containing protein.
    
 0.919
SARC_09633
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.911
SARC_00447
Uncharacterized protein.
    
 0.855
SARC_11847
60S ribosomal protein L7a.
    
 0.711
SARC_10390
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.711
SARC_00927
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 0.711
SARC_07952
U3 small nucleolar ribonucleoprotein IMP3.
   
 
  0.627
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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