STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_09532WD_REPEATS_REGION domain-containing protein. (242 aa)    
Predicted Functional Partners:
SARC_10681
H/ACA ribonucleoprotein complex subunit 4.
   
   0.955
SARC_05866
RRM domain-containing protein.
    
 
 0.929
SARC_01461
Nudix hydrolase domain-containing protein.
    
  0.718
SARC_00815
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
   
 0.689
SARC_07773
Fe2OG dioxygenase domain-containing protein.
    
 0.685
SARC_03365
Aamy domain-containing protein.
    
 0.685
SARC_02678
Alpha-amylase.
    
 0.685
SARC_13436
Serine/threonine protein kinase.
    
  0.682
SARC_10792
TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.682
SARC_07145
TK protein kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.682
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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