STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_08826Uncharacterized protein. (1143 aa)    
Predicted Functional Partners:
SARC_02584
PHD-type domain-containing protein.
    
 0.994
SARC_06013
TAFII55_N domain-containing protein.
    
 0.954
SARC_04897
TATA-box-binding protein 2.
    
 0.954
SARC_01828
TAFII28 domain-containing protein.
    
 0.953
SARC_05635
TFIIB-type domain-containing protein.
    
 0.914
SARC_12866
Uncharacterized protein.
   
 0.898
SARC_09844
Uncharacterized protein.
   
 0.898
SARC_02235
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.891
SARC_16447
Uncharacterized protein.
    
 0.888
SARC_14314
WD_REPEATS_REGION domain-containing protein.
    
 0.888
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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