STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_08977AA_TRNA_LIGASE_II_ALA domain-containing protein. (622 aa)    
Predicted Functional Partners:
SARC_17871
Alanyl-tRNA synthetase.
  
  
 0.846
SARC_16379
AA_TRNA_LIGASE_II_ALA domain-containing protein.
  
  
 0.834
SARC_16940
Alanyl-tRNA synthetase.
  
  
 0.815
SARC_05247
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
  
  
0.776
SARC_04219
tRNA-synt_2c domain-containing protein.
     
 0.725
SARC_12644
TPR_REGION domain-containing protein.
     
 0.722
SARC_12951
GST N-terminal domain-containing protein.
     
 0.543
SARC_12244
Uncharacterized protein.
     
 0.543
SARC_13615
WHEP-TRS domain-containing protein.
     
 0.510
SARC_06916
Methyl-accepting transducer domain-containing protein.
    
   0.463
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.