STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_05725Uncharacterized protein. (877 aa)    
Predicted Functional Partners:
SARC_03270
60S ribosomal protein L5.
    
 
 0.888
SARC_05566
Brix domain-containing protein.
   
 
 0.845
SARC_08112
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.820
SARC_03682
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
     
 0.747
SARC_02002
WD_REPEATS_REGION domain-containing protein.
   
  
 0.727
SARC_01025
Brix domain-containing protein.
   
    0.702
SARC_05907
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
   0.659
SARC_16453
Uncharacterized protein.
   
   0.652
SARC_08531
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
   0.652
SARC_11830
Sulfate_transp domain-containing protein.
   
 
 0.648
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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