STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_05297CMGC/CLK protein kinase. (742 aa)    
Predicted Functional Partners:
SARC_15503
Uncharacterized protein.
    
 
 0.580
SARC_08206
Serine/threonine protein kinase.
    
 
 0.580
SARC_02609
Uncharacterized protein.
    
 
 0.483
SARC_10918
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
    0.439
SARC_09205
RRM domain-containing protein.
   
 
 0.407
SARC_05377
RRM domain-containing protein.
   
 
 0.405
SARC_02655
RRM domain-containing protein.
   
 
 0.405
SARC_16547
Uncharacterized protein.
   
    0.403
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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