SARC_05254 protein (Sphaeroforma arctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SARC_05254

Uncharacterized protein. (441 aa)

Predicted Functional Partners:

SARC_03993

0.998

SARC_01257

0.975

SARC_08256

0.954

SARC_05607

0.954

SARC_15630

0.911

SARC_01824

0.907

SARC_00332

0.906

SARC_00189

0.903

SARC_09944

0.885

SARC_03014

0.834

Your Current Organism:

Sphaeroforma arctica

NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SARC_00189	SARC_00332	A0A0L0GFR7	A0A0L0GF18	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Uncharacterized protein.	0.998
SARC_00189	SARC_03014	A0A0L0GFR7	A0A0L0G6W7	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	ANK_REP_REGION domain-containing protein.	0.457
SARC_00189	SARC_05254	A0A0L0GFR7	A0A0L0G022	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Uncharacterized protein.	0.903
SARC_00189	SARC_09944	A0A0L0GFR7	A0A0L0FLE5	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.997
SARC_00332	SARC_00189	A0A0L0GF18	A0A0L0GFR7	Uncharacterized protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.998
SARC_00332	SARC_03014	A0A0L0GF18	A0A0L0G6W7	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.538
SARC_00332	SARC_05254	A0A0L0GF18	A0A0L0G022	Uncharacterized protein.	Uncharacterized protein.	0.906
SARC_00332	SARC_09944	A0A0L0GF18	A0A0L0FLE5	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.997
SARC_01257	SARC_05254	A0A0L0GEG1	A0A0L0G022	Uncharacterized protein.	Uncharacterized protein.	0.975
SARC_01824	SARC_03993	A0A0L0GAS7	A0A0L0G4F2	Uncharacterized protein.	Uncharacterized protein.	0.999
SARC_01824	SARC_05254	A0A0L0GAS7	A0A0L0G022	Uncharacterized protein.	Uncharacterized protein.	0.907
SARC_01824	SARC_15630	A0A0L0GAS7	A0A0L0F6P7	Uncharacterized protein.	Uncharacterized protein.	0.998
SARC_03014	SARC_00189	A0A0L0G6W7	A0A0L0GFR7	ANK_REP_REGION domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.457
SARC_03014	SARC_00332	A0A0L0G6W7	A0A0L0GF18	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.538
SARC_03014	SARC_05254	A0A0L0G6W7	A0A0L0G022	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.834
SARC_03014	SARC_05607	A0A0L0G6W7	A0A0L0FZ48	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.868
SARC_03014	SARC_08256	A0A0L0G6W7	A0A0L0FRF2	ANK_REP_REGION domain-containing protein.	Heat shock protein 90.	0.868
SARC_03993	SARC_01824	A0A0L0G4F2	A0A0L0GAS7	Uncharacterized protein.	Uncharacterized protein.	0.999
SARC_03993	SARC_05254	A0A0L0G4F2	A0A0L0G022	Uncharacterized protein.	Uncharacterized protein.	0.998
SARC_03993	SARC_15630	A0A0L0G4F2	A0A0L0F6P7	Uncharacterized protein.	Uncharacterized protein.	0.999