STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_05187MFS domain-containing protein. (459 aa)    
Predicted Functional Partners:
SARC_11426
Malate synthase G.
   
 0.749
SARC_08917
Cytochrome b5 heme-binding domain-containing protein.
    
 0.741
SARC_13627
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
    
  0.683
SARC_01468
AB hydrolase-1 domain-containing protein.
    
 0.677
SARC_01466
AB hydrolase-1 domain-containing protein.
    
 0.677
SARC_06953
Thymidylate synthase.
    
  0.609
SARC_13489
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.577
SARC_12922
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.577
SARC_09806
Gp_dh_N domain-containing protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.577
SARC_09691
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.577
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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