STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_03985E3 ubiquitin protein ligase. (932 aa)    
Predicted Functional Partners:
SARC_03993
Uncharacterized protein.
   
 0.999
SARC_03891
Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.993
SARC_01824
Uncharacterized protein.
   
 0.902
SARC_15630
Uncharacterized protein.
    
 0.899
SARC_13391
Histone H2B; Belongs to the histone H2B family.
    
 0.854
SARC_11752
Histone H2B; Belongs to the histone H2B family.
    
 0.854
SARC_08238
Histone H2B; Belongs to the histone H2B family.
    
 0.854
SARC_00855
Uncharacterized protein.
   
 
 0.848
SARC_13275
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.831
SARC_07546
Ubiquitin-conjugating enzyme (Huntingtin interacting protein 2); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.831
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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