STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_04409Uncharacterized protein; Belongs to the DEAD box helicase family. (654 aa)    
Predicted Functional Partners:
SARC_14130
Tr-type G domain-containing protein.
   
 0.924
SARC_03848
Uncharacterized protein.
   
 0.924
SARC_05959
Uncharacterized protein.
    
 0.916
SARC_05937
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.906
SARC_06849
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.905
SARC_01078
ATP synthase subunit gamma.
   
 
 0.903
SARC_05001
ATP synthase F1, epsilon subunit.
   
   0.888
SARC_04612
Uncharacterized protein.
   
   0.888
SARC_06918
DEAD-box ATP-dependent RNA helicase 8; Belongs to the DEAD box helicase family.
  
0.848
SARC_05866
RRM domain-containing protein.
    
 0.848
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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