STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_03666Uncharacterized protein. (121 aa)    
Predicted Functional Partners:
SARC_00692
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.938
SARC_10231
Uncharacterized protein.
  
 
 0.929
SARC_16167
Uncharacterized protein; Belongs to the ferrochelatase family.
  
 
 0.915
SARC_07319
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
 
 0.915
SARC_13028
Uroporphyrinogen-III synthase.
  
 
 0.765
SARC_02707
Farnesyl-diphosphate farnesyltransferase.
    
 0.749
SARC_02452
Uncharacterized protein.
    
 0.749
SARC_08858
Uncharacterized protein.
  
 
 0.747
SARC_07809
Uncharacterized protein.
  
 
 0.713
SARC_03516
Amino_oxidase domain-containing protein.
  
 
 0.713
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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