STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_0314960S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (135 aa)    
Predicted Functional Partners:
SARC_11847
60S ribosomal protein L7a.
  
 0.999
SARC_12243
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
SARC_10956
60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
  
 0.999
SARC_10886
Ubiquitin-40S ribosomal protein S27a.
   
 0.999
SARC_09985
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.999
SARC_10711
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
  
 0.999
SARC_10661
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.999
SARC_08689
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.999
SARC_08345
60S ribosomal protein L9.
  
 0.999
SARC_08809
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
  
 0.999
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.