SARC_02733 protein (Sphaeroforma arctica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SARC_02733

Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (425 aa)

Predicted Functional Partners:

SARC_02630

0.999

SARC_13426

0.998

SARC_11193

0.998

SARC_11056

0.998

SARC_10711

0.998

SARC_08886

0.998

SARC_08112

0.998

SARC_07853

0.998

SARC_07051

0.998

SARC_05190

0.998

Your Current Organism:

Sphaeroforma arctica

NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SARC_02630	SARC_02733	A0A0L0GAA6	A0A0L0GA16	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999
SARC_02630	SARC_05190	A0A0L0GAA6	A0A0L0G074	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.948
SARC_02630	SARC_07051	A0A0L0GAA6	A0A0L0FUV2	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	60S ribosomal protein L35.	0.938
SARC_02630	SARC_07853	A0A0L0GAA6	A0A0L0FSJ0	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	40S ribosomal protein S3-B.	0.948
SARC_02630	SARC_08112	A0A0L0GAA6	A0A0L0FSB9	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.947
SARC_02630	SARC_08886	A0A0L0GAA6	A0A0L0FPG5	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.969
SARC_02630	SARC_10711	A0A0L0GAA6	A0A0L0FLB3	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.941
SARC_02630	SARC_11056	A0A0L0GAA6	A0A0L0FK79	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.953
SARC_02630	SARC_11193	A0A0L0GAA6	A0A0L0FHR7	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.920
SARC_02630	SARC_13426	A0A0L0GAA6	A0A0L0FBZ5	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	Uncharacterized protein.	0.965
SARC_02733	SARC_02630	A0A0L0GA16	A0A0L0GAA6	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.999
SARC_02733	SARC_05190	A0A0L0GA16	A0A0L0G074	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.998
SARC_02733	SARC_07051	A0A0L0GA16	A0A0L0FUV2	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	60S ribosomal protein L35.	0.998
SARC_02733	SARC_07853	A0A0L0GA16	A0A0L0FSJ0	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	40S ribosomal protein S3-B.	0.998
SARC_02733	SARC_08112	A0A0L0GA16	A0A0L0FSB9	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.998
SARC_02733	SARC_08886	A0A0L0GA16	A0A0L0FPG5	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.998
SARC_02733	SARC_10711	A0A0L0GA16	A0A0L0FLB3	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.998
SARC_02733	SARC_11056	A0A0L0GA16	A0A0L0FK79	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.998
SARC_02733	SARC_11193	A0A0L0GA16	A0A0L0FHR7	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.	0.998
SARC_02733	SARC_13426	A0A0L0GA16	A0A0L0FBZ5	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Uncharacterized protein.	0.998