STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_02655RRM domain-containing protein. (360 aa)    
Predicted Functional Partners:
SARC_09265
Uncharacterized protein.
   
 0.925
SARC_02855
Uncharacterized protein.
   
 0.925
SARC_05259
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.924
SARC_01822
Uncharacterized protein.
   
0.917
SARC_09726
Uncharacterized protein.
   
 0.851
SARC_08424
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.827
SARC_06067
RRM domain-containing protein.
   
0.824
SARC_02735
Small nuclear ribonucleoprotein G.
   
 0.810
SARC_01551
Small nuclear ribonucleoprotein Sm D2.
   
 0.806
SARC_04780
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.804
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.