STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_01547Uncharacterized protein. (533 aa)    
Predicted Functional Partners:
SARC_11791
tRNA (adenine(58)-N(1))-methyltransferase.
   
 0.998
SARC_05103
Uncharacterized protein.
   
 0.986
SARC_14552
Uncharacterized protein.
   
 0.978
SARC_14035
Uncharacterized protein.
   
 0.978
SARC_07454
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
  
 0.922
SARC_03285
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
    0.890
SARC_00223
Uncharacterized protein.
   
   0.816
SARC_04031
Uncharacterized protein.
   
    0.814
SARC_07450
RNA helicase.
   
   0.799
SARC_09183
tRNA (guanine(46)-N(7))-methyltransferase.
   
  
 0.792
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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