STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_01278rRNA-processing protein FCF1. (196 aa)    
Predicted Functional Partners:
SARC_14583
Ribosomal RNA small subunit methyltransferase NEP1.
   
 0.998
SARC_05551
Uncharacterized protein.
   
 0.998
SARC_10568
Uncharacterized protein.
   
 0.997
SARC_07174
Sas10 domain-containing protein.
   
 0.997
SARC_04506
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.997
SARC_11796
WD_REPEATS_REGION domain-containing protein.
   
 0.995
SARC_07952
U3 small nucleolar ribonucleoprotein IMP3.
   
 0.995
SARC_07596
Uncharacterized protein.
   
 0.995
SARC_04009
Uncharacterized protein.
   
 0.995
SARC_02170
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 0.995
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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