STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_01920GCP_N_terminal domain-containing protein. (1119 aa)    
Predicted Functional Partners:
SARC_01299
Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.
   
 0.969
SARC_16306
Uncharacterized protein.
   
 0.928
SARC_03021
Spindle pole body component.
   
 0.928
SARC_03020
Spindle pole body component.
   
 0.928
SARC_05074
Isobutyryl-CoA dehydrogenase, mitochondrial.
   
 
 0.902
SARC_04484
Uncharacterized protein.
    
 
 0.896
SARC_04393
Uncharacterized protein.
   
   0.649
SARC_02840
NDK domain-containing protein; Belongs to the NDK family.
    
 0.646
SARC_18176
Uncharacterized protein.
    
 0.611
SARC_16838
Uncharacterized protein.
    
 0.611
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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