STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_00284Pyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'- phosphate (PLP), the active form of vitamin B6. (300 aa)    
Predicted Functional Partners:
SARC_07039
Carrier domain-containing protein.
 
      0.857
SARC_09449
Aminotran_1_2 domain-containing protein.
  
 
 0.727
SARC_00131
Aminotran_1_2 domain-containing protein.
  
 
 0.727
SARC_13984
Uncharacterized protein.
    
 0.669
SARC_07961
DAO domain-containing protein.
    
 0.669
SARC_04806
Phos_pyr_kin domain-containing protein.
  
  
 0.663
SARC_04805
Pyridoxal kinase.
  
  
 0.663
SARC_07051
60S ribosomal protein L35.
   
    0.629
SARC_00224
60S ribosomal protein L26.
   
    0.628
SARC_10643
Inositol-3-phosphate synthase.
 
      0.554
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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