STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SARC_00304Aldo_ket_red domain-containing protein. (348 aa)    
Predicted Functional Partners:
SARC_04651
Ion_trans domain-containing protein.
   
 0.950
SARC_07501
Protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.850
SARC_02012
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.808
SARC_10955
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
    
 0.800
SARC_14714
Ion_trans domain-containing protein.
    
 0.740
SARC_05571
Ion_trans domain-containing protein.
    
 0.740
SARC_01337
Ion_trans domain-containing protein.
    
 0.740
SARC_10527
Ion_trans_2 domain-containing protein.
    
 0.739
SARC_07292
Ion_trans domain-containing protein.
    
 0.739
SARC_01800
Uncharacterized protein.
    
 0.739
Your Current Organism:
Sphaeroforma arctica
NCBI taxonomy Id: 667725
Other names: S. arctica JP610, Sphaeroforma arctica JP610
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