STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yidASugar phosphatase YidA; Catalyzes the dephosphorylation of 2-phosphoglycolate. (233 aa)    
Predicted Functional Partners:
hypD
Hydrogenase expression/formation protein HypD.
       0.865
ribH_1
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
    
 0.806
pmbA
Metalloprotease PmbA.
 
     0.800
yjjG
Pyrimidine 5'-nucleotidase YjjG.
 
  
 0.710
KZX11821.1
DNA-binding transcriptional regulator ModE.
      
 0.674
legI
N,N'-diacetyllegionaminic acid synthase.
     
 0.668
rmlA1
Glucose-1-phosphate thymidylyltransferase 1.
  
 
 0.650
rmlA
Glucose-1-phosphate thymidylyltransferase.
  
 
 0.650
tarI
Putative ribitol-5-phosphate cytidylyltransferase.
  
 
 0.638
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.620
Your Current Organism:
Methanobrevibacter oralis
NCBI taxonomy Id: 66851
Other names: DSM 7256, M. oralis, strain ZR
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