tagO protein (Methanobrevibacter oralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tagO

Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase. (356 aa)

Predicted Functional Partners:

murE_2

0.989

murE_1

0.920

ddl

0.880

wbpI

0.730

tarI

0.712

KZX13111.1

0.705

murD_3

0.700

wbpA_1

0.671

wbpA_2

0.671

uppP

0.659

Your Current Organism:

Methanobrevibacter oralis

NCBI taxonomy Id: 66851
Other names: DSM 7256, M. oralis, strain ZR

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KZX13111.1	ddl	MBORA_08610	MBORA_08590	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase.	D-alanine--D-alanine ligase.	0.791
KZX13111.1	murE_2	MBORA_08610	MBORA_08570	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase.	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	0.582
KZX13111.1	tagO	MBORA_08610	MBORA_08580	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase.	Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.	0.705
ddl	KZX13111.1	MBORA_08590	MBORA_08610	D-alanine--D-alanine ligase.	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase.	0.791
ddl	murE_1	MBORA_08590	MBORA_05160	D-alanine--D-alanine ligase.	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.	0.506
ddl	murE_2	MBORA_08590	MBORA_08570	D-alanine--D-alanine ligase.	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	0.814
ddl	tagO	MBORA_08590	MBORA_08580	D-alanine--D-alanine ligase.	Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.	0.880
ddl	tarI	MBORA_08590	MBORA_08340	D-alanine--D-alanine ligase.	Putative ribitol-5-phosphate cytidylyltransferase.	0.557
murD_3	murE_2	MBORA_13750	MBORA_08570	UDP-N-acetylmuramoylalanine--D-glutamate ligase.	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	0.693
murD_3	tagO	MBORA_13750	MBORA_08580	UDP-N-acetylmuramoylalanine--D-glutamate ligase.	Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.	0.700
murE_1	ddl	MBORA_05160	MBORA_08590	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.	D-alanine--D-alanine ligase.	0.506
murE_1	murE_2	MBORA_05160	MBORA_08570	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	0.962
murE_1	tagO	MBORA_05160	MBORA_08580	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.	Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.	0.920
murE_1	tarI	MBORA_05160	MBORA_08340	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.	Putative ribitol-5-phosphate cytidylyltransferase.	0.556
murE_1	uppP	MBORA_05160	MBORA_13650	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.	Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP).	0.498
murE_2	KZX13111.1	MBORA_08570	MBORA_08610	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase.	0.582
murE_2	ddl	MBORA_08570	MBORA_08590	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	D-alanine--D-alanine ligase.	0.814
murE_2	murD_3	MBORA_08570	MBORA_13750	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	UDP-N-acetylmuramoylalanine--D-glutamate ligase.	0.693
murE_2	murE_1	MBORA_08570	MBORA_05160	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.	0.962
murE_2	tagO	MBORA_08570	MBORA_08580	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.	Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.	0.989