STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycf3Photosystem I assembly protein Ycf3. (248 aa)    
Predicted Functional Partners:
bepA
Beta-barrel assembly-enhancing protease.
    
0.896
hemB
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
       0.757
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
       0.757
yrrB_3
TPR repeat-containing protein YrrB.
 
     0.658
yrrB_1
TPR repeat-containing protein YrrB.
 
     0.597
KZX12895.1
Tetratricopeptide repeat protein.
  
     0.572
KZX14084.1
Tetratricopeptide repeat protein.
 
     0.556
KZX12998.1
Hypothetical protein.
       0.514
KZX12386.1
HEAT repeat protein.
  
     0.463
KZX12901.1
Hypothetical protein; Conserved virulence factor C.
  
     0.444
Your Current Organism:
Methanobrevibacter oralis
NCBI taxonomy Id: 66851
Other names: DSM 7256, M. oralis, strain ZR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.