STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
murD_3UDP-N-acetylmuramoylalanine--D-glutamate ligase. (507 aa)    
Predicted Functional Partners:
murD_2
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
  
 
0.998
murD_1
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
 
  
  0.981
tagO
Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.
 
     0.700
murE_2
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase.
 
     0.693
murE_3
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase.
  
  
 
0.554
KZX13418.1
Aspartate aminotransferase.
  
     0.522
KZX12467.1
Hypothetical protein.
  
     0.511
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
    
  0.498
gltA
Glutamate synthase [NADPH] large chain; Belongs to the glutamate synthase family.
       0.485
KZX10210.1
Sortase family protein.
  
     0.462
Your Current Organism:
Methanobrevibacter oralis
NCBI taxonomy Id: 66851
Other names: DSM 7256, M. oralis, strain ZR
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