ssuC protein (Methanobrevibacter oralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssuC

Putative aliphatic sulfonates transport permease protein SsuC. (248 aa)

Predicted Functional Partners:

cmpD

0.999

ssuA

0.987

mer

0.844

tcyC

0.677

hcp

0.616

drrA

0.586

kpsM_1

0.578

tagH_2

0.578

KZX10910.1

0.546

glnQ

0.536

Your Current Organism:

Methanobrevibacter oralis

NCBI taxonomy Id: 66851
Other names: DSM 7256, M. oralis, strain ZR

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KZX10910.1	cmpD	MBORA_17480	MBORA_14840	Putative formate dehydrogenase.	Bicarbonate transport ATP-binding protein CmpD.	0.529
KZX10910.1	glnQ	MBORA_17480	MBORA_19120	Putative formate dehydrogenase.	Glutamine transport ATP-binding protein GlnQ.	0.956
KZX10910.1	hcp	MBORA_17480	MBORA_17530	Putative formate dehydrogenase.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.504
KZX10910.1	mer	MBORA_17480	MBORA_14680	Putative formate dehydrogenase.	Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.	0.745
KZX10910.1	ssuA	MBORA_17480	MBORA_08920	Putative formate dehydrogenase.	Putative aliphatic sulfonates-binding protein precursor.	0.535
KZX10910.1	ssuC	MBORA_17480	MBORA_14830	Putative formate dehydrogenase.	Putative aliphatic sulfonates transport permease protein SsuC.	0.546
cmpD	KZX10910.1	MBORA_14840	MBORA_17480	Bicarbonate transport ATP-binding protein CmpD.	Putative formate dehydrogenase.	0.529
cmpD	drrA	MBORA_14840	MBORA_16600	Bicarbonate transport ATP-binding protein CmpD.	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	0.835
cmpD	hcp	MBORA_14840	MBORA_17530	Bicarbonate transport ATP-binding protein CmpD.	Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.	0.650
cmpD	kpsM_1	MBORA_14840	MBORA_10530	Bicarbonate transport ATP-binding protein CmpD.	Polysialic acid transport protein KpsM.	0.578
cmpD	mer	MBORA_14840	MBORA_14680	Bicarbonate transport ATP-binding protein CmpD.	Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.	0.838
cmpD	ssuA	MBORA_14840	MBORA_08920	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates-binding protein precursor.	0.988
cmpD	ssuC	MBORA_14840	MBORA_14830	Bicarbonate transport ATP-binding protein CmpD.	Putative aliphatic sulfonates transport permease protein SsuC.	0.999
drrA	cmpD	MBORA_16600	MBORA_14840	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	Bicarbonate transport ATP-binding protein CmpD.	0.835
drrA	glnQ	MBORA_16600	MBORA_19120	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	Glutamine transport ATP-binding protein GlnQ.	0.468
drrA	kpsM_1	MBORA_16600	MBORA_10530	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	Polysialic acid transport protein KpsM.	0.576
drrA	ssuA	MBORA_16600	MBORA_08920	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	Putative aliphatic sulfonates-binding protein precursor.	0.612
drrA	ssuC	MBORA_16600	MBORA_14830	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	Putative aliphatic sulfonates transport permease protein SsuC.	0.586
drrA	tagH_2	MBORA_16600	MBORA_19300	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	Teichoic acids export ATP-binding protein TagH.	0.421
drrA	tcyC	MBORA_16600	MBORA_00230	Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.	L-cystine import ATP-binding protein TcyC.	0.484