STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prmA_3Ribosomal protein L11 methyltransferase. (209 aa)    
Predicted Functional Partners:
pus10
THUMP domain protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.596
birA
Bifunctional ligase/repressor BirA.
  
    0.565
accC
Biotin carboxylase.
       0.562
KZX09923.1
H/ACA RNA-protein complex component Cbf5p.
  
   
 0.540
KZX10858.1
Hypothetical protein.
 
     0.519
KZX13230.1
Hypothetical protein; Belongs to the PDCD5 family.
  
    0.490
miaB
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase.
  
    0.471
KZX13944.1
Hypothetical protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family.
  
     0.460
csl4
Exosome complex RNA-binding protein Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.
 
     0.457
KZX13111.1
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase.
  
     0.450
Your Current Organism:
Methanobrevibacter oralis
NCBI taxonomy Id: 66851
Other names: DSM 7256, M. oralis, strain ZR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.