STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfmCFe(3+)-citrate-binding protein YfmC precursor. (371 aa)    
Predicted Functional Partners:
hmuU
Hemin transport system permease protein HmuU.
 
 0.998
fhuC
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
 
 0.998
KZX13169.1
Putative ABC transporter permease protein.
 
 0.993
KZX13168.1
Putative ABC transporter ATP-binding protein.
 
 0.992
KZX09939.1
O-methyltransferase.
 
    0.828
cbiH_1
cobalt-precorrin-3B C(17)-methyltransferase.
  
  
 0.815
KZX11821.1
DNA-binding transcriptional regulator ModE.
     
 0.770
KZX13167.1
FmdE, molybdenum formylmethanofuran dehydrogenase operon.
 
    0.620
cobB_1
Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source. Involved in the biosynthesis of the unique nickel-containing tetrapyrrole coenzyme F430, the prosthetic group of methyl-coenzyme M reductase (MCR), which plays a key role in methanogenesis and anaerobic methane oxidation. Catalyzes the ATP- dependent amidation of the two carboxylate groups at positions a and c of Ni-sirohydrochlorin, using L-glutamine or ammonia as the nitrogen source.
  
  
 0.533
KZX13267.1
Cobalamin biosynthesis protein CbiG.
 
  
 0.525
Your Current Organism:
Methanobrevibacter oralis
NCBI taxonomy Id: 66851
Other names: DSM 7256, M. oralis, strain ZR
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