STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_000215Putative ribosomal RNA methyltransferase CG11447-like. (245 aa)    
Predicted Functional Partners:
C7M84_009561
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
   0.939
C7M84_003411
WD repeat-containing protein 6.
   
 
 0.937
C7M84_002584
Putative nucleolar protein 58-like.
  
 0.934
C7M84_002790
Uncharacterized protein.
   
 
 0.919
C7M84_018036
Ubiquitin-like domain-containing protein.
  
 
 0.915
C7M84_003368
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
 0.909
C7M84_025510
Putative 60S ribosomal protein L24.
   
 
 0.905
C7M84_000206
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.893
C7M84_001472
Uncharacterized protein.
   
 
 0.887
C7M84_022066
Uncharacterized protein.
   
 
 0.880
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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