STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_018822Putative transmembrane channel-like protein 3. (1865 aa)    
Predicted Functional Partners:
C7M84_006670
Uncharacterized protein.
      
 0.622
C7M84_006706
Putative GPI-anchored adhesin-like protein PGA55 isoform X2.
      
 0.613
C7M84_004529
Uncharacterized protein.
     
 0.610
C7M84_003931
Putative wolframin-like.
    
 
 0.608
C7M84_002729
Putative transcription factor MafA.
      
 0.544
C7M84_020463
Harmonin.
    
 
 0.510
C7M84_000018
VWFC domain-containing protein.
    
 
 0.479
C7M84_013180
Leucine-rich repeat serine/threonine-protein kinase 1.
   
  0.433
C7M84_011697
Putative whirlin.
    
 
 0.424
C7M84_011696
PDZ domain-containing protein.
    
 
 0.424
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.