STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_016997Putative H(Beta)58 protein. (496 aa)    
Predicted Functional Partners:
C7M84_002140
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 0.998
C7M84_007306
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.997
C7M84_008684
Sorting nexin-2.
   
 
 0.972
C7M84_014050
Putative sorting nexin-12 isoform X2.
    
 0.960
C7M84_024223
Sorting nexin 12-like protein.
    
 0.960
C7M84_023250
Sorting nexin-27.
   
 
 0.923
C7M84_000630
Putative N-acylneuraminate cytidylyltransferase.
   
 
 0.917
C7M84_021350
Uncharacterized protein.
 
 
 
 0.838
C7M84_006570
Sorting nexin-17.
   
 
 0.748
C7M84_001860
Uncharacterized protein.
 
 
 
 0.747
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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