STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_018393E3 ubiquitin-protein ligase Nedd-4. (332 aa)    
Predicted Functional Partners:
C7M84_018994
UBA domain-containing protein.
 
  
 0.906
C7M84_018995
Uncharacterized protein.
 
  
 0.905
C7M84_022415
Ubiquitin/ribosomal L40 fusion protein.
    
 0.879
C7M84_022359
Putative mothers against decapentaplegic-like 6.
    
 0.878
C7M84_001258
Ubiquitin-like domain-containing protein.
    
 0.872
C7M84_004845
Mothers against decapentaplegic homolog.
   
 0.758
C7M84_019704
Non-specific serine/threonine protein kinase.
    
 0.740
C7M84_024670
Putative serine/threonine-protein kinase.
   
 0.680
C7M84_021187
Putative 26S proteasome non-ATPase regulatory subunit 4.
    
 0.673
C7M84_016039
Putative 26S proteasome non-ATPase regulatory subunit 4.
    
 0.673
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.