STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_009110Putative alpha-ketoglutarate-dependent dioxygenase alkB-like 4. (186 aa)    
Predicted Functional Partners:
C7M84_013109
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
 
      0.781
C7M84_005312
Putative methyltransferase-like protein 4; Belongs to the MT-A70-like family.
      
 0.665
C7M84_025380
Alkylated DNA repair protein alkB-like protein 7.
   
  
 0.636
C7M84_010876
Putative alpha-ketoglutarate-dependent dioxygenase alkB-like 6 isoform X2.
      
 0.584
C7M84_003863
MTS domain-containing protein.
      
 0.581
C7M84_003623
Putative jmjC domain-containing protein 4-like.
   
  
 0.572
C7M84_001682
Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.
   
    0.548
C7M84_014343
Alkylated DNA repair protein alkB-like protein 8.
   
  
 0.502
C7M84_005360
Mediator of RNA polymerase II transcription subunit 28.
      
 0.478
C7M84_015130
Trimethyllysine dioxygenase, mitochondrial.
      
 0.439
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.