STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_003398Tetratricopeptide repeat protein 21B. (558 aa)    
Predicted Functional Partners:
C7M84_020525
Unc-79-like protein.
   
 0.892
C7M84_003849
Uncharacterized protein.
   
 0.892
C7M84_003399
Uncharacterized protein.
 
     0.854
C7M84_013843
Uncharacterized protein.
  
 0.842
C7M84_009192
WD_REPEATS_REGION domain-containing protein.
   
 0.837
C7M84_021449
WD repeat-containing protein 35.
   
 0.828
C7M84_010907
Putative intraflagellar transport protein 43-like A-like isoform X2.
    
 0.806
C7M84_023213
Putative WD repeat-containing protein 19-like.
   
 0.801
C7M84_011080
Intraflagellar transport protein 74-like protein.
   
 0.626
C7M84_002342
IFT81_CH domain-containing protein.
     
 0.617
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.