STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_024268Enhancer of rudimentary homolog; May have a role in the cell cycle. (104 aa)    
Predicted Functional Partners:
C7M84_009129
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
  
 0.811
C7M84_003261
Small nuclear ribonucleoprotein Sm D3.
   
   0.740
C7M84_006498
Putative THO complex subunit 4.
   
 
 0.715
C7M84_008268
Small nuclear ribonucleoprotein polypeptide G.
   
    0.663
C7M84_006562
Small nuclear ribonucleoprotein G.
   
    0.663
C7M84_008188
Interleukin enhancer binding factor.
   
    0.636
C7M84_001694
RRM domain-containing protein.
   
 
 0.627
C7M84_014874
Uncharacterized protein.
    
 
 0.586
C7M84_023446
Mago-nashi.
   
   0.533
C7M84_019115
Putative 40S ribosomal protein S3-like isoform X1.
   
 
 0.514
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.