STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_003988Histone-lysine N-methyltransferase SETD1B. (1215 aa)    
Predicted Functional Partners:
C7M84_009387
Retinoblastoma-binding protein 5.
    
 0.966
C7M84_015836
B30.2/SPRY domain-containing protein.
    
 0.965
C7M84_001121
CXXC-type domain-containing protein.
   
 
 0.922
C7M84_021035
Putative WD repeat-containing protein 82.
   
 
 0.916
C7M84_012868
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.915
C7M84_009665
Putative histone-lysine N-methyltransferase SETD1.
 
      0.877
C7M84_024145
Uncharacterized protein.
    
 0.862
C7M84_011703
Histone acetyltransferase KAT2A.
    
 0.816
C7M84_022415
Ubiquitin/ribosomal L40 fusion protein.
    
  0.803
C7M84_001258
Ubiquitin-like domain-containing protein.
    
  0.800
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.