STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_017384Putative RNA-directed DNA polymerase from mobile element jockey-like. (955 aa)    
Predicted Functional Partners:
C7M84_007223
60S ribosomal protein L21.
   
   0.569
C7M84_002311
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.508
C7M84_023859
BRCA1-associated RING domain protein 1.
    
 0.508
C7M84_019102
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.508
C7M84_023327
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.508
C7M84_011533
60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
   
   0.485
C7M84_002338
Uncharacterized protein.
   
   0.436
C7M84_020562
BRCA1-A complex subunit MERIT40.
    
 0.425
C7M84_006114
Ribosomal protein L8.
   
 
 0.413
C7M84_003850
Ribosomal protein L8.
   
 
 0.413
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.