STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_017776RIC1 domain-containing protein. (1577 aa)    
Predicted Functional Partners:
C7M84_019616
Retrograde Golgi transport protein RGP1-like protein.
    
 0.981
C7M84_019745
Rab GTPase.
    
 0.969
C7M84_017246
Putative ras-related protein Rab-34.
    
 0.872
C7M84_020216
Uncharacterized protein.
    
 0.863
C7M84_023734
Putative conserved oligomeric Golgi complex subunit 8.
   
 0.849
C7M84_001533
Putative ADP-ribosylation factor-related protein 1 isoform X1.
    
 0.825
C7M84_004951
Uncharacterized protein.
     
 0.770
C7M84_014806
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.736
C7M84_002856
ADP-ribosylation factor-like protein 13B.
    
 0.732
C7M84_002614
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
 0.713
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.