STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_004463Putative vacuolar protein sorting-associated protein 51-like. (259 aa)    
Predicted Functional Partners:
C7M84_003025
Putative vacuolar protein sorting-associated protein 52-like.
   
 0.909
C7M84_021891
Vps53_N domain-containing protein.
    
 0.883
C7M84_021890
Vacuolar protein sorting-associated protein 53-like protein.
    
 0.883
C7M84_000226
Uncharacterized protein.
    
 
 0.867
C7M84_018895
Syntaxin-6; Belongs to the syntaxin family.
    
 0.845
C7M84_000372
Putative vacuolar protein sorting-associated protein 54.
   
 0.785
C7M84_008030
Putative vacuolar protein sorting-associated protein 54-like isoform X1.
   
 0.785
C7M84_023734
Putative conserved oligomeric Golgi complex subunit 8.
    
 0.691
C7M84_019110
Conserved oligomeric Golgi complex subunit 4.
     
 0.679
C7M84_023823
Putative syntaxin-16 isoform X4.
    
 0.667
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.