STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C7M84_025581cobW domain-containing protein. (106 aa)    
Predicted Functional Partners:
C7M84_007249
Putative ATP-dependent RNA helicase DHX34.
  
 
 0.848
C7M84_010859
Putative cysteinyl-tRNA synthetase, mitochondrial.
  
  
 0.497
C7M84_014394
Cysteine--tRNA ligase, cytoplasmic.
  
  
 0.497
C7M84_011510
Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1.
      
 0.455
C7M84_014813
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 
 0.450
C7M84_014141
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 
 0.450
C7M84_001214
Methionine aminopeptidase.
    
 
 0.450
C7M84_014696
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
      
 0.436
C7M84_008716
Uncharacterized protein.
     
 0.435
C7M84_025573
Uncharacterized protein.
     
 0.423
Your Current Organism:
Penaeus vannamei
NCBI taxonomy Id: 6689
Other names: Litopenaeus vannamei, P. vannamei, Pacific white shrimp, Penaeus (Litopenaeus) vannamei, Penaeus sp. AT-2008, white Pacific shrimp, white shrimp
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